------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007963.1:subseq_30433359,100428_ Strand = - Positions = 49731 - 49651
 Found by:  Infernal (score=20.12) Covels (score=25.38)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -15.4

         ..(((((((........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         (((((({((........{[[{((((((((((......-..........))))))))))}]]}........-...))}))))))
 target  UCCUUGACAUUGCAUAAUGAUGGUGGUGCUCCAAUUG-UCAAAGACAUGGGUGCUGCUUGAUGAAACCUG-CUCUGCCAGGGA
                          ****           ^^                        ****                     

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = CM007963.1:subseq_30433359,100428_ Strand = - Positions = 56671 - 56593
 Found by:  Infernal (score=16.11) Covels (score=15.52)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -11.91

         ..(((((((...............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({(((((((..............{[[({(((((({({(........-----..)})}))))))})]]}..--...)))))))}).
 target  UUUUCUAUGUUACGGCAUAGUCUAUGAGACCAGUCUGCCAAACUAAC-----UGGCCUGACUGGCUGAUGA--AUUGCAUAGGCAU
                                 ****           ^^^                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = CM007963.1:subseq_30433359,100428_ Strand = - Positions = 43171 - 43085
 Found by:  Infernal (score=10.53)
 Stem2 length = 12   Apical loop length = 11   Insertion in stem2 = 2, 0
 Free Energy = -13.24

         ..(((((((................((((((((((.((.(((...............))))))))))))))).........)))))))..
 model   uucggucaugcg---------UuaAUGAcGgccug-gc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .(([((((((((((...........{[[(((((((.((.((((....--.......)))))))))))))]]}...))-))))))))])).
 target  GUUAUGUUUGGGGAUCGGACACCUAUGAUUGAACUGUUUUGGCAAAC--AGCAGCAGCCAAGGGUUCAAGAUUUUUU-UUUAAACAGAAG
                                  ****              ^^^                      ****